Jaguar S-TypeX200 / X202 / X204 / X206 · 1999-2008 · All engines
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Jaguar S-Type Water Leak, Water in Boot

On the S-Type, water in the spare wheel well nearly always comes past the boot lid seal or the welded seams it crosses at the sides of the opening, with the rear lamp gaskets next. A wet front footwell usually means a blocked scuttle drain. I'd find the entry point with a talc and hose test before buying a seal, and dry the well quickly, because the rear electrics live there.

6likely causes

How bad is it · Safe to drive

Safe to drive, but find it and dry it out soon

The leak itself does no harm to driving. Standing water in the spare well reaches the rear fuse box and modules, which leads to a flat battery and warning messages if it is left.

Jagaux Doctor · typical causes and checks — not a diagnosis of any one car jagaux.com/doctor/cases/s-type/water-leak/

Get a diagnosis for your S-Type

This page covers the usual causes. The Doctor works on your car: describe what it does and what has already been replaced, and it narrows these down to your symptoms, model year and fuse layout — which check to do first, and what not to buy yet.

This page lists the usual causes — it is not a diagnosis of your car.

Which one applies to yours depends on your symptoms, your model year and what has already been done to it.

01

Likely causes, most common first

Read the check cost before the odds: a free check that rules a cause out beats a likely guess that costs money.

1

Water around the spare wheel: the boot lid seal

The boot seal clips onto a pressed metal lip, and on these cars it often doesn't press hard enough against the lid. Water driven under it while you drive runs down the inside of the opening into the spare wheel well.

How to tell

A puddle under or around the spare wheel after rain or a long wet drive. Hosing the car while it stands still may leave the boot dry. A leaking seal can also drag on the lid, so it no longer lifts when the release button is pressed.

How to check

Fold the rear seat, close the lid and look from inside the boot in daylight for light showing past the seal. Lift the boot floor and follow any water tracks down the back panel to see which side they start from.

Worth checking

Worth trying: pull the seal off, lay a bead of sealant along the top of the lip or in the channel inside the seal, and push it back on. Alternatives: build the lip up with a layer of tape so the seal grips harder, or fit a new seal, roughly 100 USD at a dealer. A seal worn in one spot can also be refitted turned round the opening so the worn part sits higher.

likely sealant or tape, or a new seal
2

New seal and still wet: the seams at the sides of the opening

Down each side of the boot opening there is a welded joint with a small notch where two panels meet, and the seal crosses it. Water finds that low point under the seal and runs inside the rear wing to the spare well. Later cars got a butyl filler on that seam from the factory; earlier ones often lack it.

How to tell

The leak carries on after a seal change or after the lamps are resealed. It is often worse with the car parked nose-down, when water pools at the weld about two thirds of the way down the side.

How to check

Lift the seal on each side and look at the seam where it crosses: bare joints, gaps or rust between the sheets. Check the joint in the gutter channel above each rear wing and the area next to the boot lock as well.

Worth checking

Worth trying: clean the seam and lay flexible bituminous or butyl sealer an inch above and below the joint, then refit the seal. Bituminous stays soft and comes off easily later; silicone hardens and is a pain to remove.

likely a tube of flexible seam sealer
3

Water behind the trim at the back corners: rear lamp seals

Each rear lamp unit sits on a thin foam or rubber gasket and is held by three fixings: two nuts and one plastic push fitting. If the push fitting springs loose or the gasket flattens, rain runs behind the lamp and down into the boot.

How to tell

Damp boot side trim or carpet behind a rear lamp, or water at the back corners of the well rather than the middle.

How to check

Take the trim off behind the lamp, have someone run a hose over the rear window and lamp, and watch the back of the lamp from inside. A dusting of talc on the dried panel shows the trail clearly.

Worth checking

Worth trying: make sure all three fixings are tight and the push fitting is home, then reseal the gasket, or run a bead of black sealant round the outer edge of the lamp.

plausible free to reseat; sealant
4

Dry seal and seams: boot vents and blocked drains

There are air vents either side of the boot behind the carpets, and the exhaust heat can distort them. A distorted vent lets spray in, and the drain plugs in the floor don't sit at the lowest point, so the water stays.

How to tell

Water in the well even though the lid seal, seams and lamps test dry. A flooded well can also bring false alarms and a flat battery. Electrical faults that come and go are a reason to lift the boot floor even without a visible leak: a fuse box and modules sit by the spare wheel.

How to check

Pull the side carpets and look at the vents for warping and water marks. Check the drain plugs and the small holes in the rib in the centre of the well for a covering of tar-like tape.

Worth checking

Worth trying: replace and seal the vents, and clear the drains. A small hole, about 1/8 in, punched at the lowest corrugation near the battery lets water out before it reaches the electrics, but it doesn't stop the leak.

unlikely new vents and sealant
5

Wet front footwell: blocked scuttle drains

Rain on the windscreen drains out through the scuttle under the wiper cover. When leaves and seeds block that drain, the water backs up into the heater intake and finds its way into the footwell. On the left side it can also reach the control module behind the glovebox and cause fault messages.

How to tell

A wet carpet in a front footwell after heavy rain or a car wash. Water tipped into the scuttle intake turns up on the floor within a few minutes.

How to check

Take off the wiper arms and the scuttle cover and clear the drains. Then take out the cabin filter housing and look at the seals round the ducts, the heater and A/C hoses and the cable grommets in the bulkhead.

Worth checking

Worth trying: clear the scuttle drain and intake duct, reseal any loose grommet or duct seal, and dry the carpet and underlay fully. Check the module behind the glovebox for corrosion if warnings have appeared.

plausible free to clear; a few hours to strip
6

Dripping from the roof light: sunroof seal or drains

The sunroof tray has four drain tubes, about 5 mm across, one at each corner, running down the front and rear pillars. If a drain blocks or the glass doesn't close fully onto its seal, the tray overflows and water drips out at the interior light.

How to tell

Drips from the dome light or headlining after heavy rain, sometimes onto the gear lever.

How to check

Open the roof and look into the front corners of the tray; tilt it up to see the rear ones with a torch. Make sure the glass closes all the way.

Worth checking

Worth trying: clear the front drains with a cotton bud and the rear ones with a length of wire. Compressed air works, but go gently so the tube doesn't blow off its outlet. Dry the light housing before refitting it.

unlikely free to clear
02

The order to check them in

The point of the order is money: each step either rules a cause out or makes the next one worth doing. Green is free, amber costs a little, red is the one to arrive at last.

1

Where the water is

Lift the boot floor and the front carpets and note where the water sits: spare wheel well, a back corner, a front footwell or the headlining. Each points to a different source.

free
2

Water test with talc

Dry the area completely, dust the suspect panels with talc, close up and soak the rear window and boot with a hose. The first trail in the talc leads to the source. If it stays dry, try again after a drive in the rain.

free
3

Boot seal and lip

Look for daylight past the seal from inside the boot with the seat folded. Reseat it on sealant or tape, or replace it.

free to check
4

Seams at the sides of the opening

Lift the seal where it crosses the welded joint on each side and at the lock, and fill any gap with flexible seam sealer.

a tube of sealer
5

Rear lamps

Check all three lamp fixings and the gasket, then hose over the lamp while you watch from inside.

free to check
6

Boot vents and drains

Behind the side carpets, check the vents for warping and the floor drains for blockage.

cheap
7

Scuttle drains for a wet footwell

Remove the wiper arms and scuttle cover, clear the drain and intake, and check the bulkhead grommets and duct seals.

a few hours
8

Protect the electrics

Once the leak is found, dry the spare well and look at the rear fuse box, connectors and modules there for green corrosion. Water in the well is a known cause of a flat battery and odd warning messages on these cars.

free
04

What it usually isn't

Don't spend money here first:

A dry boot after hosing the car while it stands: the seal can still let water in on the move.
Water dripping under the car either side of the gearbox with the A/C on: those are the condensate drains doing their job.
A drain hole in the boot floor as the cure: it protects the electrics, but the water still gets in.

If none of this finds it:

If none of this finds it: after rear bumper work, check the hole where the parking sensor wires pass through the body; an unsealed grommet there lets water on the bumper seep into the boot.
If none of this finds it: for a footwell that stays wet with clear drains, the joint in the bulkhead seam is worth checking, though that means stripping the front interior.
If none of this finds it: white marks along the top edge of the windscreen, under its rubber, show water getting in there; the same water corrodes the heated screen connections and kills one half of it.
If none of this finds it: water pooling in the engine bay over the knock sensor has brought a misfire and restricted performance after rain on a 3.0 V6 that also had a wet boot, so look at where it runs in from above.

None of these sound like your S-Type?

Describe what yours does and what has already been replaced. The Doctor works through the same cases against your symptoms and model year, and tells you which check to do first.

05

On jagaux.com

Ratings, fuse numbers and torque figures vary by model year and market. Read the legend on your own car before pulling anything, and use the figures in the manual for your car, not the ones in a video.

06

More Jaguar S-Type faults

water-leak

Check your VIN: exactly which car you have and which bulletins apply to it.

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